[INFO] fetching crate flann-sys 0.1.0...
[INFO] checking flann-sys-0.1.0 against try#72f88fc4e9458f89516a0b8b0868f3718aec5b47 for pr-74989
[INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-5/source
[INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 72f88fc4e9458f89516a0b8b0868f3718aec5b47
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+72f88fc4e9458f89516a0b8b0868f3718aec5b47" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate flann-sys 0.1.0
[INFO] finished tweaking crates.io crate flann-sys 0.1.0
[INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+72f88fc4e9458f89516a0b8b0868f3718aec5b47" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+72f88fc4e9458f89516a0b8b0868f3718aec5b47" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+72f88fc4e9458f89516a0b8b0868f3718aec5b47" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 82ce46006e1b4363db9a4b212d8e9af3d60de23957c6774dc9f5ca571ffc17a4
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "82ce46006e1b4363db9a4b212d8e9af3d60de23957c6774dc9f5ca571ffc17a4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "82ce46006e1b4363db9a4b212d8e9af3d60de23957c6774dc9f5ca571ffc17a4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "82ce46006e1b4363db9a4b212d8e9af3d60de23957c6774dc9f5ca571ffc17a4", kill_on_drop: false }`
[INFO] [stdout] 82ce46006e1b4363db9a4b212d8e9af3d60de23957c6774dc9f5ca571ffc17a4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+72f88fc4e9458f89516a0b8b0868f3718aec5b47" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ea5a59c545fdbd7343d10cb3efeeff383d22660253742a009f6951f6526f9a3d
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "ea5a59c545fdbd7343d10cb3efeeff383d22660253742a009f6951f6526f9a3d", kill_on_drop: false }`
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling glob v0.2.11
[INFO] [stderr]    Compiling ucd-util v0.1.8
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling utf8-ranges v1.0.4
[INFO] [stderr]    Compiling proc-macro2 v0.2.3
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling libloading v0.4.3
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling log v0.3.9
[INFO] [stderr]    Compiling quote v0.4.2
[INFO] [stderr]    Compiling clang-sys v0.21.2
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling bindgen v0.32.3
[INFO] [stderr]    Compiling env_logger v0.4.3
[INFO] [stderr]    Compiling flann-sys v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-fe19c31d00c48859/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rustc-link-lib=gomp
[INFO] [stderr]   cargo:rustc-link-lib=stdc++
[INFO] [stderr]   running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-60cc9e465d86c64e/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The C compiler identification is GNU 9.3.0
[INFO] [stderr]   -- The CXX compiler identification is GNU 9.3.0
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc -- works
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ -- works
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- Found PythonInterp: /usr/bin/python (found version "2.7.18") 
[INFO] [stderr]   -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "")
[INFO] [stderr]   -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) 
[INFO] [stderr]   -- Found OpenMP_C: -fopenmp (found version "4.5") 
[INFO] [stderr]   -- Found OpenMP_CXX: -fopenmp (found version "4.5") 
[INFO] [stderr]   -- Found OpenMP: TRUE (found version "4.5")  
[INFO] [stderr]   -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-60cc9e465d86c64e/out
[INFO] [stderr]   -- Build type: Debug
[INFO] [stderr]   -- Building C bindings: ON
[INFO] [stderr]   -- Building examples: OFF
[INFO] [stderr]   -- Building tests: OFF
[INFO] [stderr]   -- Building documentation: OFF
[INFO] [stderr]   -- Building python bindings: OFF
[INFO] [stderr]   -- Building matlab bindings: OFF
[INFO] [stderr]   -- Building CUDA library: OFF
[INFO] [stderr]   -- Using OpenMP support: ON
[INFO] [stderr]   -- Using MPI support: OFF
[INFO] [stderr]   -- Configuring incomplete, errors occurred!
[INFO] [stderr]   See also "/opt/rustwide/target/debug/build/flann-sys-60cc9e465d86c64e/out/build/CMakeFiles/CMakeOutput.log".
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning at CMakeLists.txt:78 (message):
[INFO] [stderr]     hdf5 library not found, some tests will not be run
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning at CMakeLists.txt:117 (message):
[INFO] [stderr]     gtest library not found, some tests will not be run
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp
[INFO] [stderr]   CMake Error: : System Error: Read-only file system
[INFO] [stderr]   CMake Error at src/cpp/CMakeLists.txt:5 (configure_file):
[INFO] [stderr]     configure_file Problem configuring file
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at '
[INFO] [stderr]   command did not execute successfully, got: exit code: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5577aa935020 - std::backtrace_rs::backtrace::libunwind::trace::h452faf99f32e7c93
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96
[INFO] [stderr]      1:     0x5577aa935020 - std::backtrace_rs::backtrace::trace_unsynchronized::he40edc71437667a1
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/../../backtrace/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x5577aa935020 - std::sys_common::backtrace::_print_fmt::h6c51d6ade71f46bf
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/sys_common/backtrace.rs:79
[INFO] [stderr]      3:     0x5577aa935020 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h3cd15d7003dec37a
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/sys_common/backtrace.rs:58
[INFO] [stderr]      4:     0x5577aa95b4fc - core::fmt::write::h1857a60b204f1b6a
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/core/src/fmt/mod.rs:1080
[INFO] [stderr]      5:     0x5577aa9314f7 - std::io::Write::write_fmt::hac61caff894c35ae
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/io/mod.rs:1517
[INFO] [stderr]      6:     0x5577aa9379c0 - std::sys_common::backtrace::_print::haa2f390fb7957e3e
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/sys_common/backtrace.rs:61
[INFO] [stderr]      7:     0x5577aa9379c0 - std::sys_common::backtrace::print::h48c7cbbad9013bb1
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/sys_common/backtrace.rs:48
[INFO] [stderr]      8:     0x5577aa9379c0 - std::panicking::default_hook::{{closure}}::h8b7ff05a31e71d55
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/panicking.rs:208
[INFO] [stderr]      9:     0x5577aa93770c - std::panicking::default_hook::h2f00c78800d98e4c
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/panicking.rs:227
[INFO] [stderr]     10:     0x5577aa938023 - std::panicking::rust_panic_with_hook::h4eaa635e4694aef3
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/panicking.rs:577
[INFO] [stderr]     11:     0x5577aa937bf9 - std::panicking::begin_panic_handler::{{closure}}::hec242f1b136b5ff2
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/panicking.rs:484
[INFO] [stderr]     12:     0x5577aa93548c - std::sys_common::backtrace::__rust_end_short_backtrace::h1f3cc383ee6c0374
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/sys_common/backtrace.rs:153
[INFO] [stderr]     13:     0x5577aa937bb9 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/panicking.rs:483
[INFO] [stderr]     14:     0x5577aa937b6b - std::panicking::begin_panic_fmt::hebfdcd945bbd27b1
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/panicking.rs:437
[INFO] [stderr]     15:     0x5577aa3fb3b7 - cmake::fail::h5ac34a445f962f17
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885
[INFO] [stderr]     16:     0x5577aa3facfc - cmake::run::hdae76e59475531dd
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:863
[INFO] [stderr]     17:     0x5577aa3f676d - cmake::Config::build::h1f94ac9664857d70
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:698
[INFO] [stderr]     18:     0x5577aa3f1410 - build_script_build::main::hbcb82f98f47bff8d
[INFO] [stderr]                                  at /opt/rustwide/workdir/build.rs:30
[INFO] [stderr]     19:     0x5577aa3f1ebb - core::ops::function::FnOnce::call_once::ha25630f8fed39c7a
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/core/src/ops/function.rs:227
[INFO] [stderr]     20:     0x5577aa3f1cee - std::sys_common::backtrace::__rust_begin_short_backtrace::h3f7672ab2cf804d7
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/sys_common/backtrace.rs:137
[INFO] [stderr]     21:     0x5577aa3f3921 - std::rt::lang_start::{{closure}}::h1756896810f21122
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/rt.rs:66
[INFO] [stderr]     22:     0x5577aa938421 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hecc21eb9018cc197
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/core/src/ops/function.rs:259
[INFO] [stderr]     23:     0x5577aa938421 - std::panicking::try::do_call::h174ad655d084b5c7
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/panicking.rs:381
[INFO] [stderr]     24:     0x5577aa938421 - std::panicking::try::h479e6054ce28de10
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/panicking.rs:345
[INFO] [stderr]     25:     0x5577aa938421 - std::panic::catch_unwind::hb558ddea2b3e9c45
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/panic.rs:382
[INFO] [stderr]     26:     0x5577aa938421 - std::rt::lang_start_internal::h163149047f0a8b61
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/rt.rs:51
[INFO] [stderr]     27:     0x5577aa3f38f7 - std::rt::lang_start::h6f268acce0217ffe
[INFO] [stderr]                                  at /rustc/72f88fc4e9458f89516a0b8b0868f3718aec5b47/library/std/src/rt.rs:65
[INFO] [stderr]     28:     0x5577aa3f181a - main
[INFO] [stderr]     29:     0x7f56986620b3 - __libc_start_main
[INFO] [stderr]     30:     0x5577aa3f10ce - _start
[INFO] [stderr]     31:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "ea5a59c545fdbd7343d10cb3efeeff383d22660253742a009f6951f6526f9a3d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ea5a59c545fdbd7343d10cb3efeeff383d22660253742a009f6951f6526f9a3d", kill_on_drop: false }`
[INFO] [stdout] ea5a59c545fdbd7343d10cb3efeeff383d22660253742a009f6951f6526f9a3d
